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--- software:art:install [2007/12/11 09:50]
paulojus
+++ software:art:install [2007/12/11 19:10] (atual)
paulojus
@@ Linha 5: / Linha 5: @@
 We will also assume you have ''root'' access to the system, altough many instructions can also use ''sudo''
-=== 1. Installaing the [[http://www.r-project.org|R software]] ===
+==== Installing the R software ====
-.1 Add the R repository in the ''source.list'' (alternativelly you may use the synaptic tool).\\
+. Add the R repository in the ''source.list'' (alternativelly you may wish to use the synaptic tool).\\
+.1 Open the file:\\
-.1.1 Open the file:\\
   $ sudo su -
   root$ vim /etc/apt/sources.list
-.1.2 Add the repository by including the following line to the ''source.list'' file\\
+.2 Add the repository by including the following line to the ''source.list'' file\\
   deb http://cran.r-project.org/bin/linux/ubuntu gutsy/
-.2.3 Install the keys (Ubuntu specific)\\
+.3 Install the keys (Ubuntu specific)\\
   root$ gpg --keyserver subkeys.pgp.net --recv-key E2A11821
   root$ gpg -a --export E2A11821 | sudo apt-key add -
   root$ apt-get update
-.2.4 Install R
+.4 Install R
   root$ apt-get install r-base r-base-core r-base-html r-base-latex r-doc-html r-doc-info r-doc-pdf r-recommended
-=== 2. Install other tools ===
+==== Install other tools ====
-  root$ sudo apt-get install g++ libpq-dev gfortran xemacs21 ess
+  root$ sudo apt-get install g++ libpq-dev gfortran xemacs21 ess lapack3  lapack3-dev refblas3 refblas3-dev
-=== 3. Get the tools to install **aRT** dependencies ===
+==== Get the tools to install aRT dependencies ====
 This includes installing a ''MySQL'' data base and compiling ''TerraLib''\\
   root$ wget http://www.leg.ufpr.br/aRT/install-aRT-dep.zip
@@ Linha 39: / Linha 38: @@
 Ainda neste último passo, após a atualização dos programas do Ubuntu é automaticamente feita o download e compilação do TerraLib/TerraView (e isto demora MUITO!!!).
-A seguir faça crie o link simbólico\\
+If **terralib/terraView** compiled well you will see on screen:\\
-  $ sudo ln -s /usr/local/terralib/aplicativos/terraView/linux/terraView /usr/bin
+  make[1]: Saindo do diretório `/usr/local/terralib/terraView/linux'
-  $ source /etc/bash.bashrc
-=== Installing R packages: aRT and sp ===
+Then create a symbolic link to call the **terraView** application\\
+  root$ sudo ln -s /usr/local/terralib/aplicativos/terraView/linux/terraView /usr/bin
+If you see the mesage:\\
+  ./install-aRT-dep.sh: 154: Syntax error: Bad substitution
+Then add the enviroment variable manually by adding the folowwing lines to your ''/etc/bash.bashrc'' file:\\
+  TERRALIBDIR=/usr/local/terralib
+  LD_LIBRARY_PATH=$TERRALIBDIR/terralibx/lib
+  export LD_LIBRARY_PATH
+and load the environmental variables with: (new user sessions will load this automatically):
+  root$ source /etc/bash.bashrc
+==== Installing R packages: aRT and sp ====
 Start R:\\
   root$ R
@@ Linha 51: / Linha 63: @@
   > install.packages("aRT", contrib="http://www.leg.ufpr.br/aRT")
-=== Installing other R Spatial packages ===
+==== Installing other R Spatial packages ====
 You may wish to install other **Spatial** packages from the R-PROJECT. Required packages can be installed individually or the entire //CRAN SPATIAL Task View// can be installed as follows from the R prompt.\\
   > install.packages("ctv", dep=T, repos="http://cran.fiocruz.br/")
@@ Linha 57: / Linha 69: @@
   > install.views("Spatial")  ## takes a loooooog time
+Quit R with:
+  > q(save=T)
+==== MySQL setup ===
+Start the BDMS with ''root'' (DBMS root, not system root!!!) permissions from the linux prompt with:\\
+  root$ mysql -u root -p
-Para dar privilégions totais a um usuário no MySQL:
+You will be prompt for the DBMS root password. After typing it in you will the the mysql prompt ''(mysql >)''. To grant full privileges to a MySQL user (''aluno'' in the example below) type:\\
+  mysql> grant all privileges on *.* to aluno@localhost ;
+  mysql> quit
-  - Inicie o mysql na linha de comando do LINUX com:
+Other user and permissions can be set. However we will use **aRT** tools to do this!!! Even the above instructions could be se from **aRT** (using the aRT function ''addPermission()'') if the DBMS root pasword is available.
-  $ mysql -u root -p
+==== Testing the installation ====
+To check whethr the installation above is working well go to a "normal user" account in your linux system (here we use "aluno") start R\\
+  aluno$ R
- - No ''prompt'' do MySQL: (indicado por >) digite, por exemplo apra o usuário aluno):
+Loading the aRT package,
+  > require(aRT)
-  > grant all privileges on *.* to aluno@localhost
+you will see to following in the R screen:\\
+  Carregando pacotes exigidos: aRT
+  Carregando pacotes exigidos: sp
+  ---------------------------------------------
+  R-TERRALIB API
+  aRT version 1.4-2 (2007-12-07) is now loaded
+  ---------------------------------------------
+Now try to connect the DBMS: \\
+  > con <- openConn()
+  > con
+  Object of class aRTconn
+  DBMS: "MySQL"
+  User: "aluno"
+  Password: ""
+  Port: 3306
+  Host: ""
+If this works then **great**!! You are ready to use aRT. You can experiment woth several example scripts at the [[http://www.leg.ufpr.br/aRT|aRT web page]] and/or chack the aRT vignettes (also avaiable at the aRT page). To list the aRT  vignettes shiped with aRT type:\\
+  > vignette(package="aRT")
+  Vignettes in package 'aRT':
+  aRTconn                 Connecting and Managing Databases with aRT (source, pdf)
+  aRTintro                aRT: R-TerraLib API (source, pdf)
+  aRTsp                   Working with sp and aRT (source, pdf)
+  aRTtable                Tables and Queries With aRT (source, pdf)

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