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--- software:art:install [2007/12/10 16:28]
paulojus
+++ software:art:install [2007/12/11 19:10] (atual)
paulojus
@@ Linha 1: / Linha 1: @@
 ====== Setup and Linux Install ======
-Here there are how to install from an "fresh" linux instalation
+Here there are how to install from an "fresh" linux installation. Here we assume an ''Ubuntu (gutsy)'' installation but and appropriate changes should be done for other Linux "flavors".
+We will also assume you have ''root'' access to the system, altough many instructions can also use ''sudo''
+==== Installing the R software ====
+. Add the R repository in the ''source.list'' (alternativelly you may wish to use the synaptic tool).\\
+.1 Open the file:\\
   $ sudo su -
   root$ vim /etc/apt/sources.list
-Adicione no arquivo sources.list a linha do repositório do R:\\
+.2 Add the repository by including the following line to the ''source.list'' file\\
+  deb http://cran.r-project.org/bin/linux/ubuntu gutsy/
-    deb http://cran.r-project.org/bin/linux/ubuntu gutsy/
-Agora instale as chaves do repositório do R para o Ubuntu
+.3 Install the keys (Ubuntu specific)\\
   root$ gpg --keyserver subkeys.pgp.net --recv-key E2A11821
   root$ gpg -a --export E2A11821 | sudo apt-key add -
   root$ apt-get update
-Neste pondo pode-se voltar ao usuario com permissoes de sudo
+.4 Install R
+  root$ apt-get install r-base r-base-core r-base-html r-base-latex r-doc-html r-doc-info r-doc-pdf r-recommended
-  $ sudo apt-get install g++ libpq-dev
+==== Install other tools ====
-  $ sudo apt-get install r-base r-base-core r-base-html r-base-latex r-doc-html r-doc-info r-doc-pdf r-recommended
+  root$ sudo apt-get install g++ libpq-dev gfortran xemacs21 ess lapack3  lapack3-dev refblas3 refblas3-dev
-  $ wget http://www.leg.ufpr.br/aRT/install-aRT-dep.zip
-  $ unzip install-aRT-dep.zip
-  $ sudo ./install-aRT-dep.sh --add-system-variables
-Este último passo deve demorar bastante!
+==== Get the tools to install aRT dependencies ====
+This includes installing a ''MySQL'' data base and compiling ''TerraLib''\\
+  root$ wget http://www.leg.ufpr.br/aRT/install-aRT-dep.zip
+  root$ unzip install-aRT-dep.zip
+  root$ sudo ./install-aRT-dep.sh --add-system-variables
 Neste ultimo passo uma série de programas do Ubuntu foram atualizados e/ou instalados. (Clicar em (S) qudo solicitado para instalar o programa). Em particular foi instalado o banco MySQL. \\
-**Nota:** Na instalação é pedida a senha de "root" para o administrador do banco. MySQL que defini como sendo 'aluno'.
+**Nota:** Na instalação é pedida a senha de "root" para o administrador do banco, que não é a mesma do sistema!
+The last step takes a long time compiling ''Terralib''.
 Ainda neste último passo, após a atualização dos programas do Ubuntu é automaticamente feita o download e compilação do TerraLib/TerraView (e isto demora MUITO!!!).
-A seguir faça crie o link simbólico
+If **terralib/terraView** compiled well you will see on screen:\\
+  make[1]: Saindo do diretório `/usr/local/terralib/terraView/linux'
-  $ sudo ln -s /usr/local/terralib/aplicativos/terraView/linux/terraView /usr/bin
+Then create a symbolic link to call the **terraView** application\\
-  $ source /etc/bash.bashrc
+  root$ sudo ln -s /usr/local/terralib/aplicativos/terraView/linux/terraView /usr/bin
-Inicie o R como sudo i instale pacotes necessários
+If you see the mesage:\\
+  ./install-aRT-dep.sh: 154: Syntax error: Bad substitution
-  $ sudo R
+Then add the enviroment variable manually by adding the folowwing lines to your ''/etc/bash.bashrc'' file:\\
+  TERRALIBDIR=/usr/local/terralib
+  LD_LIBRARY_PATH=$TERRALIBDIR/terralibx/lib
+  export LD_LIBRARY_PATH
-Na linha de comando do R ( > ) digite:
+and load the environmental variables with: (new user sessions will load this automatically):
+  root$ source /etc/bash.bashrc
+==== Installing R packages: aRT and sp ====
+Start R:\\
+  root$ R
+At the R prompt ''( > )'' type the following commands to install the packages ''sp'' and ''aRT''. ''aRT'' depends on ''sp'' since uses the representation of spatial objects defined by this package. \\
   > install.packages("sp", dep=T, repos="http://cran.fiocruz.br/")
   > install.packages("aRT", contrib="http://www.leg.ufpr.br/aRT")
-E faça tb (ainda no R)
+==== Installing other R Spatial packages ====
+You may wish to install other **Spatial** packages from the R-PROJECT. Required packages can be installed individually or the entire //CRAN SPATIAL Task View// can be installed as follows from the R prompt.\\
   > install.packages("ctv", dep=T, repos="http://cran.fiocruz.br/")
   > require(ctv)
-  > install.views("Spatial")  ## bastante demorado!!
+  > install.views("Spatial")  ## takes a loooooog time
+Quit R with:
+  > q(save=T)
+==== MySQL setup ===
+Start the BDMS with ''root'' (DBMS root, not system root!!!) permissions from the linux prompt with:\\
+  root$ mysql -u root -p
+You will be prompt for the DBMS root password. After typing it in you will the the mysql prompt ''(mysql >)''. To grant full privileges to a MySQL user (''aluno'' in the example below) type:\\
+  mysql> grant all privileges on *.* to aluno@localhost ;
+  mysql> quit
+Other user and permissions can be set. However we will use **aRT** tools to do this!!! Even the above instructions could be se from **aRT** (using the aRT function ''addPermission()'') if the DBMS root pasword is available.
+==== Testing the installation ====
+To check whethr the installation above is working well go to a "normal user" account in your linux system (here we use "aluno") start R\\
+  aluno$ R
+Loading the aRT package,
+  > require(aRT)
+you will see to following in the R screen:\\
+  Carregando pacotes exigidos: aRT
+  Carregando pacotes exigidos: sp
+  ---------------------------------------------
+  R-TERRALIB API
+  aRT version 1.4-2 (2007-12-07) is now loaded
+  ---------------------------------------------
+Now try to connect the DBMS: \\
+  > con <- openConn()
+  > con
+  Object of class aRTconn
+  DBMS: "MySQL"
+  User: "aluno"
+  Password: ""
+  Port: 3306
+  Host: ""
+If this works then **great**!! You are ready to use aRT. You can experiment woth several example scripts at the [[http://www.leg.ufpr.br/aRT|aRT web page]] and/or chack the aRT vignettes (also avaiable at the aRT page). To list the aRT  vignettes shiped with aRT type:\\
+  > vignette(package="aRT")
+  Vignettes in package 'aRT':
+  aRTconn                 Connecting and Managing Databases with aRT (source, pdf)
+  aRTintro                aRT: R-TerraLib API (source, pdf)
+  aRTsp                   Working with sp and aRT (source, pdf)
+  aRTtable                Tables and Queries With aRT (source, pdf)

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